Prework for Nov 1-3 Seattle Workshop
It is recommended that you download the Tellurium development environment on your laptop before arriving. Tellurium includes the COBRAphy software so you do not need to load it separately.
If you attended the May workshop you need to get the new version of the software.
Simulation Software Cheat Sheet
Modeling Cheat Sheet
Simulator Documentation with Lots of Examples
Introductory Slides to Simulator Software
Common Reaction Rate Laws
Introductory Slides: Theory and Practice
Herbert Sauro has generously made available two of his books. One is on pathway modeling and the other is on enzyme kinetics. These books are in PDF format and only for use by workshop participants. Please respect the distribution limitation. The books are also available in hard copy form from Amazon. Books are password protected.
Enzyme Kinetics Text Book
Pathway Modeling Text Book
Online Python Tutorial (optional)
If you are not familiar with python this is a good tutorial: